rmarkdown: Dynamic Documents for R

Convert R Markdown documents into a variety of formats.

Version: 2.8
Depends: R (≥ 3.0)
Imports: tools, utils, knitr (≥ 1.22), yaml (≥ 2.1.19), htmltools (≥ 0.3.5), evaluate (≥ 0.13), jsonlite, tinytex (≥ 0.31), xfun (≥ 0.21), methods, stringr (≥ 1.2.0)
Suggests: shiny (≥ 1.6.0), tufte, testthat (≥ 3.0.0), digest, dygraphs, vctrs, tibble, fs, rsconnect, withr (≥ 2.4.2), bslib (≥ 0.2.4), sass (≥ 0.3.1)
Published: 2021-05-07
Author: JJ Allaire [aut], Yihui Xie ORCID iD [aut, cre], Jonathan McPherson [aut], Javier Luraschi [aut], Kevin Ushey [aut], Aron Atkins [aut], Hadley Wickham [aut], Joe Cheng [aut], Winston Chang [aut], Richard Iannone ORCID iD [aut], Andrew Dunning ORCID iD [ctb], Atsushi Yasumoto ORCID iD [ctb, cph] (Number sections Lua filter), Barret Schloerke [ctb], Carson Sievert ORCID iD [ctb], Christophe Dervieux [ctb], Devon Ryan ORCID iD [ctb], Frederik Aust ORCID iD [ctb], Jeff Allen [ctb], JooYoung Seo ORCID iD [ctb], Malcolm Barrett [ctb], Rob Hyndman [ctb], Romain Lesur [ctb], Roy Storey [ctb], Ruben Arslan [ctb], Sergio Oller [ctb], RStudio, PBC [cph], jQuery Foundation [cph] (jQuery library), jQuery contributors [ctb, cph] (jQuery library; authors listed in inst/rmd/h/jquery-AUTHORS.txt), jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in inst/rmd/h/jqueryui-AUTHORS.txt), Mark Otto [ctb] (Bootstrap library), Jacob Thornton [ctb] (Bootstrap library), Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Alexander Farkas [ctb, cph] (html5shiv library), Scott Jehl [ctb, cph] (Respond.js library), Ivan Sagalaev [ctb, cph] (highlight.js library), Greg Franko [ctb, cph] (tocify library), John MacFarlane [ctb, cph] (Pandoc templates), Google, Inc. [ctb, cph] (ioslides library), Dave Raggett [ctb] (slidy library), W3C [cph] (slidy library), Dave Gandy [ctb, cph] (Font-Awesome), Ben Sperry [ctb] (Ionicons), Drifty [cph] (Ionicons), Aidan Lister [ctb, cph] (jQuery StickyTabs), Benct Philip Jonsson [ctb, cph] (pagebreak Lua filter), Albert Krewinkel [ctb, cph] (pagebreak Lua filter)
Maintainer: Yihui Xie <xie at yihui.name>
BugReports: https://github.com/rstudio/rmarkdown/issues
License: GPL-3
URL: https://github.com/rstudio/rmarkdown, https://pkgs.rstudio.com/rmarkdown/
NeedsCompilation: no
SystemRequirements: pandoc (>= 1.14) - http://pandoc.org
Citation: rmarkdown citation info
Materials: README NEWS
In views: ReproducibleResearch
CRAN checks: rmarkdown results

Downloads:

Reference manual: rmarkdown.pdf
Vignettes: Lua filters in R Markdown
Learn R Markdown
Package source: rmarkdown_2.8.tar.gz
Windows binaries: r-devel: rmarkdown_2.8.zip, r-release: rmarkdown_2.8.zip, r-oldrel: rmarkdown_2.8.zip
macOS binaries: r-release: rmarkdown_2.8.tgz, r-oldrel: rmarkdown_2.8.tgz
Old sources: rmarkdown archive

Reverse dependencies:

Reverse depends: basecallQC, BDP2, Data2LD, frequency, MAFDash, RcmdrPlugin.UCA, sangeranalyseR, sesameData, TestGardener, tufterhandout
Reverse imports: abseqR, actel, addinslist, addinsOutline, alevinQC, AlpsNMR, AMARETTO, amplican, ANOVAIREVA, ANOVAShiny, ANOVAShiny2, AnVILPublish, apa, apisensr, archetyper, ari, ariExtra, ASSOCShiny, attachment, autoharp, aweSOM, BatchQC, bdclean, BETS, binb, biocompute, BiocStyle, BiocWorkflowTools, BioNetStat, blandr, blastula, BLCOP, blogdown, BLRShiny, BLRShiny2, bookdown, boot.heterogeneity, brinton, bsplus, bumblebee, canprot, caRpools, cartools, CEMiTool, ChAMP, chicane, chimeraviz, ChIPexoQual, chronicle, CLUSTShiny, CMShiny, coexnet, compareGroups, COMPASS, condformat, conflr, convergEU, corporaexplorer, corto, countsimQC, CTShiny, CTShiny2, data.validator, DataExplorer, dataMaid, DataPackageR, dataReporter, DEP, DEploid, disaggR, DiscoRhythm, distill, dlookr, dmdScheme, DriveML, easyreporting, effectR, ELMER, EML, encryptedRmd, enrichTF, EpiSignalDetection, epitweetr, esATAC, eseis, explore, ezpickr, FactoInvestigate, fastqcr, flair, flexdashboard, flextable, flowAI, flowPloidy, flying, FlyingR, formattable, ftExtra, gCrisprTools, GeneTonic, genogeographer, ggPMX, gistr, gitdown, Gmisc, GOFShiny, govdown, graph4lg, GWASinspector, HHG, hoardeR, hrbrthemes, hypeR, i2dash, ideal, igate, ImmuneSpaceR, inlmisc, journalabbr, kableExtra, knitrBootstrap, KNNShiny, KnowSeq, komaletter, learnr, lfmm, liftr, linl, litteR, MACSQuantifyR, mailmerge, mdapack, MDSPCAShiny, memoiR, memor, MendelianRandomization, metabolic, MetaIntegrator, metaseqR2, microbiomeExplorer, minidown, mitch, MLDAShiny, MLDAShiny2, MNLR, monographaR, NACHO, NBShiny, NBShiny2, NBShiny3, ncappc, NDP, ngsReports, officedown, omicplotR, OMICsPCA, openintro, openPrimeRui, ORION, orloca, oRus, osmose, pagedown, parsermd, pathfindR, pcaExplorer, personr, phonfieldwork, pinp, pkgdown, pkgnet, POMA, postcards, posterdown, preferably, PreKnitPostHTMLRender, PREPShiny, prereg, prettydoc, PROBShiny, processR, prodigenr, PTXQC, qbld, qgshiny, quarto, radiant.data, radix, randomForestExplainer, RCAS, rchallenge, rcompendium, rdtLite, rebook, regionReport, Relectoral, RepoGenerator, reportfactory, reprex, resumer, revealjs, RInno, RLumShiny, rmake, rmdfiltr, rmdformats, rmdplugr, rmdshower, RPyGeo, rrtable, rtemps, rticles, RtutoR, safetyGraphics, SAMtool, SBGNview, SBGNview.data, scmeth, scTensor, scTGIF, sdcMicro, SeqSQC, shattering, SHELF, shinyHeatmaply, ShinyItemAnalysis, simplevis, singleCellTK, siteymlgen, SmartEDA, smog, spANOVA, spathial, SpatialEpiApp, spsur, STAT, STAT2, statcheck, stationery, statsr, statVisual, stevetemplates, strm, swirlify, synapter, timevis, tint, TPP, trackr, truthiness, tscR, tufte, ubiquity, uiucthemes, upstartr, vidger, vitae, VTShiny, wallace, webex, worcs, workflowr, wpa, xaringan, ymlthis
Reverse suggests: a4Classif, a4Core, a4Preproc, a4Reporting, aaSEA, ABACUS, abbyyR, ABC.RAP, abess, ABHgenotypeR, abstractr, academictwitteR, accelerometry, ACE, ace2fastq, acnr, ACSNMineR, ActFrag, activatr, ActiveDriverWGS, ActivePathways, activityCounts, ActivityIndex, actuaryr, AdaptGauss, adaptiveGPCA, adaptMT, AdaSampling, add2ggplot, addScales, adductData, adductomicsR, adegraphics, adepro, adept, adespatial, adfExplorer, AdhereR, AdhereRViz, ADImpute, adjclust, admixr, admixturegraph, admmDensestSubmatrix, ADMMsigma, ADMUR, adnuts, adobeanalyticsr, adoptr, ADPclust, adpss, ADtools, AdvancedBasketballStats, advclust, adventr, AeRobiology, afex, AffiXcan, affycoretools, afpt, aGE, aggregateBioVar, AGHmatrix, aghq, agridat, agriwater, AHM, ahnr, ahptopsis2n, aire.zmvm, airGR, airGRdatassim, airGRteaching, airportr, airqualityES, airr, AirSensor, airt, ajv, akc, akmedoids, ALA4R, alakazam, ALDEx2, alfr, alfred, algo, algorithmia, allcontributors, AllelicImbalance, allestimates, alluvial, almanac, alpaca, AlphaBeta, alphabetr, AlphaPart, AlphaSimR, AlphaVantageClient, ALPS, altair, amapGeocode, amber, AMCTestmakeR, amelie, amen, ammistability, AMOUNTAIN, AmpGram, ampir, AMR, amt, analysisPipelines, analyzer, Anaquin, AnchorRegression, Andromeda, andurinha, ANF, AnglerCreelSurveySimulation, anim.plots, animalcules, animint2, anipaths, anndata, AnnotationBustR, AnnotationHub, AnnotationHubData, annotatr, anomalize, ANOVAreplication, anovir, anscombiser, antaresEditObject, antaresProcessing, antaresRead, antaresViz, AnthropMMD, anticlust, antitrust, AnVIL, anyLib, aof, aoos, aopdata, AOV1R, APAlyzer, apcf, apeglm, apex, apexcharter, aphid, APIS, apollo, applicable, apricom, apsimx, aptg, apyramid, AQuadtree, ArchaeoChron, ArchaeoPhases, archeofrag, arcos, arcpullr, arctools, areal, arealDB, arena2r, arenar, argonR, argparse, ARIbrain, arkdb, arkhe, armspp, ARPobservation, arrangements, arrow, arsenal, artemis, artMS, ARTool, aRxiv, asciicast, asciiSetupReader, ashr, ASICS, ASICSdata, aspi, assertable, assertr, AssessORF, AssessORFData, ASSIGN, assignPOP, assignR, ASSISTant, asteRisk, asus, asymmetry, asymptor, atable, atsd, atSNP, attempt, attrib, AUCell, auctestr, auctionr, audiometry, auditor, augmentedRCBD, auk, aurelius, ausplotsR, auth0, AutoDeskR, autoimage, autoMrP, automultinomial, autostsm, autothresholdr, autoTS, Autotuner, avar, aVirtualTwins, avocado, AWAPer, aweek, aws.alexa, aws.ecx, AzureAuth, AzureCognitive, AzureContainers, AzureCosmosR, AzureGraph, AzureKeyVault, AzureKusto, azuremlsdk, AzureQstor, AzureRMR, AzureStor, AzureTableStor, AzureVision, AzureVM, BaalChIP, babelgene, babette, BacArena, backbone, backpipe, backShift, bacon, bacondecomp, badgecreatr, baggr, bain, balance, Ball, BALLI, bama, bambu, bamlss, bamp, bamsignals, BANDITS, bang, bannerCommenter, banocc, BANOVA, baRcodeR, BARIS, barplot3d, BART, baRulho, BAS, base.rms, base64url, baseballDBR, BaseSet, BASiCS, basictabler, basilisk, basilisk.utils, BASiNET, 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BoSSA, BOSSreg, boundingbox, box, boxr, bp, bpa, bpbounds, bpcs, bpnreg, bpp, BPRMeth, bRacatus, brainflowprobes, brainKCCA, BRDT, breakDown, breakfast, breathtestcore, breathteststan, brendaDb, BRETIGEA, BRGenomics, brglm2, brickr, BridgeDbR, bridgedist, bridgesampling, briskaR, brm, brms, brokenstick, broom, broom.helpers, broomExtra, brotli, BrowserViz, brunnermunzel, bs4Dash, BSBT, bsem, bSims, bslib, bsseq, bssm, BSW, BTYD, BTYDplus, BubbleTree, bubblyr, buffeRs, buildmer, buildr, bulletcp, bumbl, bunching, bunchr, burnr, busdater, BUSpaRse, butcher, bvartools, bwsTools, bytescircle, c2c, c3, caesar, CAGEfightR, CAGEr, CAISEr, calculus, calendar, caliver, calm, calpassapi, campfin, camsRad, caMST, camtrapR, cancensus, CancerGram, CancerInSilico, candisc, cansim, canvasXpress, cape, capitalR, capl, captr, caracas, carbonate, card, Cardinal, caRecall, careless, caret, caretEnsemble, caROC, carpenter, CARS, cartograflow, cartography, cascadess, cascsim, casebase, casen, casino, CASMAP, cassandRa, CAST, cat.dt, cat2cat, catalog, CATALYST, catchr, catenary, catsim, cattonum, causalCmprsk, causaldrf, CausalImpact, CausalMBSTS, causaloptim, CausalQueries, causalweight, CB2, cbaf, CBDA, cBioPortalData, cbsodataR, CCAMLRGIS, ccfindR, ccmap, ccoptimalmatch, ccostr, ccRemover, cdata, CDatanet, cder, cdfquantreg, cdparcoord, CDSeq, celaref, celarefData, celda, CellaRepertorium, cellbaseR, CellBench, celldex, cellity, CellMixS, cellranger, cellscape, celltrackR, CellTrails, CENFA, Census2016, censusapi, censusr, censusxy, ceRNAnetsim, ceRtainty, ceser, cetcolor, CeTF, CFAcoop, cfda, cfDNAPro, CGGP, cgmquantify, CGPfunctions, ChainLadder, ChAMP, chandwich, ChangePointTaylor, charlatan, cheatR, checkdown, checkmate, checkpoint, checkr, cheese, chemCal, ChemmineR, chemmodlab, ChemoSpec, ChemoSpec2D, chess, chest, CHETAH, Chicago, childesr, childhoodmortality, chilemapas, chillR, chipenrich, chipenrich.data, chipPCR, ChIPpeakAnno, ChIPseeker, ChIPSeqSpike, chirps, chk, chlorpromazineR, CHNOSZ, CHOIRBM, cholera, CholWishart, chromoMap, ChromSCape, chromswitch, chromVAR, chronosphere, chunkhooks, ciccr, cicero, CIEE, cifti, ciftiTools, cimir, cinaR, CINNA, cinterpolate, circacompare, circle, circRNAprofiler, circularEV, circumplex, cIRT, CISE, CiteFuse, ciTools, CityWaterBalance, ciuupi, ciuupi2, civis, CJAMP, Ckmeans.1d.dp, clarifai, ClassifyR, classInt, cleaner, cleanerR, cleanNLP, cleanr, cleaver, clhs, cli, clifro, climaemet, climate, climatrends, ClimInd, ClimMobTools, ClimProjDiags, climwin, clinmon, clinspacy, clipr, cliqueMS, CliquePercolation, CLLmethylation, clock, clubSandwich, CluMP, CluMSID, ClussCluster, ClustAssess, clustcurv, Cluster.OBeu, clusteredinterference, clusterhap, Clustering, ClusterJudge, clustermole, clustermq, clusternomics, clusterPower, ClusterR, ClusterSignificance, ClustGeo, clustifyr, clustifyrdatahub, ClusTorus, clustree, ClustVarLV, clustvarsel, CLVTools, cmcR, cmdfun, cmocean, cmprskcoxmsm, cmR, cms, cmstatr, CNAIM, cnbdistr, CNEr, cNORM, CNVfilteR, CNVRanger, CNVScope, coala, cobalt, coca, COCOA, cocorresp, coda.base, codebook, coder, codified, CoDiNA, codyn, coefplot, cofad, CoFRA, CoGAPS, cogena, cognitoR, CohortPlat, cohorttools, coil, coinmarketcapr, Coinprofile, cointmonitoR, cointReg, colf, collapse, CollapseLevels, collectArgs, collin, coloc, colocr, colorBlindness, colorDF, colordistance, colorednoise, colorhcplot, colorist, colorpatch, colorspace, colorSpec, colourpicker, colourvision, colr, colt, comat, combi, combinedevents, commonsMath, communication, comorbidity, Compack, comparer, compcodeR, comperank, comperes, completejourney, complexity, complexNet, ComplexUpset, compositions, composits, comprehenr, compstatr, comsimitv, comtradr, concurve, condir, condTruncMVN, condusco, condvis2, conf, CONFESS, config, configr, confintr, confoundr, CongreveLamsdell2016, conjurer, conos, conquestr, ConR, consensus, consensusDE, consensusOV, consensusSeekeR, ConsReg, constellation, conStruct, contactdata, container, contentid, contextual, contingency, ContourFunctions, contrast, contribution, conumee, convdistr, convexjlr, convey, CoopGame, CoordinateCleaner, cops, copula, CopyNeutralIMA, coRanking, corazon, Corbi, coRdon, coreCT, CoRegFlux, CoreGx, corHMM, corncob, CornerstoneR, cornet, coro, coronavirus, CoRpower, corpus, corpustools, corr2D, corrcoverage, CorrectOverloadedPeaks, correlation, correlationfunnel, corrgram, corrgrapher, corrplot, corrr, cort, cosa, coseq, cosinor2, CoSMoS, countcolors, countdata, countfitteR, countyfloods, countytimezones, coveffectsplot, covid19.analytics, covid19dbcand, covid19italy, covid19sf, covid19swiss, covidcast, covidprobability, covidregionaldata, covidsymptom, covr, covRNA, cowbell, cowplot, cowsay, coxed, coxmeg, coxphw, coxrt, CPBayes, cPCG, cpp11, cppRouting, cpr, cpsurvsim, cpsvote, cqcr, cragg, crandep, cranly, credentials, creditmodel, cregg, cRegulome, CRF, crfsuite, crimedata, crisprseekplus, CrispRVariants, criticalpath, critpath, crochet, cronR, CropDetectR, crossmeta, crossrun, crosstable, CrossVA, crosswalkr, crplyr, crso, crsra, crtests, crul, crunch, crunchy, cry, csaw, cSEM, CSGo, CSIndicators, csodata, cspp, CSSQ, CSTools, CTD, ctmcd, ctmle, ctmm, CTP, cTRAP, ctrdata, ctsGE, cubature, Cubist, cultevo, cumulocityr, cuperdec, curatedAdipoArray, curatedAdipoChIP, curatedAdipoRNA, curatedMetagenomicData, curatedTCGAData, curephEM, curl, cursr, curstatCI, customCMPdb, customsteps, cusum, cutpointr, cvCovEst, cvcqv, cvcrand, CVEK, cvequality, cvGEE, cvms, CVXR, cxr, cycleRtools, cyclomort, cydar, cyphr, CytobankAPI, CytobankBridgeR, cytofan, cytofast, cytomapper, cytometree, cytominer, CytoTree, czechrates, D2MCS, D3GB, d3Tree, dabestr, DACF, dad, dada2, dagitty, dagLogo, DAIME, DAISIE, DALEXtra, DAMEfinder, DAMisc, dampack, dams, dann, danstat, daqapo, Dark, dartR, dashboardthemes, dashCoreComponents, dashHtmlComponents, dasper, dat, data.table, data.tree, DatabaseConnector, DatabionicSwarm, dataCompareR, datadigest, DataEditR, datafsm, datagovindia, dataMeta, datamods, dataone, datapack, datapackage.r, datapasta, dataprep, dataPreparation, dataquieR, dataRetrieval, datarobot, datasauRus, DataSpaceR, dataspice, datastepr, datastructures, DataVisualizations, datplot, daymetr, dbarts, dbflobr, dbhydroR, DBI, DBItest, dbmss, dbparser, dbplyr, dbscan, dcanr, dccmidas, dccvalidator, DCEM, DCEtool, DCG, dcminfo, dde, ddiv, ddp, ddpcr, dearseq, debar, debCAM, deBInfer, debrowser, debugr, decido, decisionSupport, deckgl, DeclareDesign, decoder, decomposedPSF, decompr, decompTumor2Sig, decontam, deconvolveR, DeepBlueR, deepredeff, deepSNV, deflateBR, DEFormats, DegNorm, deGradInfer, DEGreport, deisotoper, delayed, DelayedDataFrame, DelayedMatrixStats, DeLorean, deltaCaptureC, dematel, DemografixeR, demoShiny, dendextend, dendRoAnalyst, dendrometeR, dendroTools, dendsort, denoiSeq, denovolyzeR, densitr, densratio, densvis, denvax, DepecheR, DepLogo, depmap, DEqMS, derfinder, derfinderData, derfinderHelper, derfinderPlot, derivmkts, DEScan2, DescriptiveStats.OBeu, descriptr, DescrTab2, descstat, desctable, DESeq2, DesignCTPB, DesignLibrary, designr, DEsingle, desiR, desplot, details, detectRUNS, detectseparation, DetLifeInsurance, detrendr, detzrcr, devRate, devtools, DevTreatRules, DEWSeq, DEXSeq, dexter, dextergui, dexterMST, dfadjust, dfidx, dfoliatR, dformula, dfvad, DGEobj, DGEobj.utils, DGVM3D, DHARMa, dhh, DHS.rates, di, diagis, diagonals, DiagrammeR, DIAlignR, DiallelAnalysisR, dialr, dials, diceR, did, dietr, diffcyt, diffdf, diffEnrich, diffeqr, diffloop, diffloopdata, diffobj, diffpriv, diffusr, diffuStats, DiffXTables, digest, dimensionsR, DImodels, dint, diproperm, dipsaus, Dire, DirectEffects, dirichletprocess, disaggregation, discfrail, disclapmix, discnorm, discoverableresearch, DiscreteFDR, disdat, diseq, Disequilibrium, DisImpact, dissever, distantia, distcomp, distcrete, distdichoR, disto, distr6, distributions3, distributionsrd, disttools, dittodb, dittoSeq, div, divDyn, diveMove, divergence, DiversityOccupancy, diyar, dkanr, dlstats, dm, DMCFB, dMod, DMRScan, dmrseq, dmtools, DNABarcodeCompatibility, DNABarcodes, DNAshapeR, DNAtools, do, dobin, doc2concrete, dockerfiler, DockerParallel, docknitr, docstring, document, documenter, docxtools, dodgr, dominanceanalysis, DominoEffect, donut, DOPE, doppelgangR, doremi, dorothea, Doscheda, dosedesignR, doseminer, doseR, dosresmeta, DOT, dotdot, dotwhisker, DoubleML, downlit, downloadthis, downsize, dPCP, dplyr, dplyr.teradata, dplyrAssist, dqrng, dr4pl, dragon, dragracer, drake, DramaAnalysis, drat, drawProteins, drawsample, DrBats, DRDID, dreamerr, DRHotNet, drhur, drimmR, DrImpute, DrInsight, driveR, DRomics, DropletTestFiles, DropletUtils, drord, DRR, drtmle, ds4psy, DSAIDE, DSAIRM, dsb, dscore, dsims, DSjobtracker, DSLite, DSMolgenisArmadillo, dsrTest, DSS, DSSAT, dssd, DSsim, dst, DT, dtangle, DTAT, DtD, DTDA.ni, dtpcrm, dtplyr, DTSg, dtwclust, DTwrappers, duawranglr, DUBStepR, dumbbell, Dune, DuoClustering2018, dupRadar, dupree, dvmisc, DWBmodelUN, dynamac, dynamichazard, DynareR, dynCorr, dyngen, dynr, dynRB, dynutils, dynwrap, E4tools, EAinference, eAnalytics, earlyR, earthtide, earthtones, easypackages, easyPubMed, easySdcTable, easySVG, easyVerification, eat, eatATA, eatGADS, eatRep, EBASS, EbayesThresh, EBImage, ebirdst, EBSEA, ec50estimator, ecap, ecb, ecce, ECctmc, Ecfun, ech, ECharts2Shiny, echarts4r, echarty, eChem, echo.find, echor, eclust, ecmwfr, ecoCopula, EcoDiet, ecolottery, ECOSolveR, ecospace, ecospat, ecostats, EcotoneFinder, ecr, Ecume, EDA, edbuildr, eddi, eddington, edeaR, edfReader, edfun, edgarWebR, editData, edl, EDOIF, edstan, EdSurvey, eechidna, eefAnalytics, eemR, eeptools, eesim, EFAtools, EFAutilities, EFDR, effectsize, EfficientMaxEigenpair, eFRED, EGAnet, egor, EGRET, EGRETci, eGST, eha, ehelp, EHR, EHRtemporalVariability, eia, eicm, eiCompare, eikosograms, einet, eirm, eisaR, EIX, eixport, elasticsearchr, 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mosaic.find, mosaicCalc, MOSim, mosqcontrol, MOSS, motif, motifbreakR, motifcluster, motifcounter, MotifDb, motifmatchr, motifr, motmot, motoRneuron, mountainplot, MouseFM, MouseGastrulationData, move, moveWindSpeed, mozzie, mpath, MPBoost, mpcmp, mpe, MPGE, MPkn, mplot, MPN, mpra, MPTmultiverse, mptools, MQMF, mrbsizeR, mrf2d, MRFcov, mrgsim.sa, mrgsolve, mRpostman, MRReg, MrSGUIDE, MRTSampleSizeBinary, msaeDB, msaenet, msaeRB, msaR, msce, MSCMT, MsCoreUtils, mscstexta4r, mscstts, mscsweblm4r, msde, MSEtool, msgl, msigdbr, msImpute, msir, msma, msmtools, MSnbase, MSPrep, msPurity, MSRDT, msSPChelpR, MSstats, MSstatsConvert, MSstatsPTM, MSstatsQC, MSstatsSampleSize, MSstatsTMT, MSstatsTMTPTM, mstate, mStats, mstDIF, mstherm, mstknnclust, mstrio, MTA, MTAR, mtconnectR, MTLR, MTPS, mudata2, mueRelativeRisk, muHVT, MullerPlot, mully, multgee, MultiAssayExperiment, MultiBaC, MultiBD, multibridge, multiclassPairs, multicolor, multicrispr, MultiDataSet, multidplyr, MultiFit, multiGSEA, 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officer, offlineChange, ojsr, olsrr, OmaDB, omicRexposome, OmicsLonDA, OMICsPCAdata, OmicsPLS, omicsPrint, omicwas, Omixer, OmnipathR, omopr, omu, Onassis, OnassisJavaLibs, OncoBayes2, oncomix, OncoSimulR, ondisc, oneclust, onemap, onemapsgapi, OneR, oneSENSE, ONEST, onion, onlineFDR, onlineforecast, onnx, ontoFAST, ontologyIndex, ontologyPlot, ontologySimilarity, oolong, OOS, opalr, opencage, opencastR, openCR, opendatatoronto, openEBGM, OpenImageR, OpenLand, OpenML, openPrimeR, OpenRepGrid.ic, openSkies, OpenSpecy, openssl, openSTARS, OpenStats, opentripplanner, openxlsx, opitools, oppar, oppr, optband, OptCirClust, optigrab, optimalFlow, optimalFlowData, OptimaRegion, optimCheck, optimr, optimus, optimx, optinterv, optional, optionstrat, optiRum, optiSel, optmatch, OpVaR, OPWeight, Orcs, orderly, ordinalClust, ores, orf, ORFik, org, org.Mxanthus.db, Organism.dplyr, OrgMassSpecR, origami, ormPlot, oro.nifti, orsifronts, OrthoPanels, osfr, oshka, osmdata, osmextract, osmgeosample, osmplotr, OSNMTF, osrmr, OTclust, OTrecod, otsad, outbreaker2, outcomerate, outForest, OutliersO3, OUTRIDER, OUwie, overviewR, OVESEG, OVtool, OWEA, OwenQ, oxcAAR, oxcgrt, oysteR, ozmaps, PAC, packager, packageRank, packcircles, packDAMipd, packFinder, packrat, padma, padr, pafdR, pafr, PAFway, pagemap, pagenum, pageviews, pagoda2, pagoo, PAIRADISE, PairViz, pairwiseComparisons, palaeoSig, palasso, paleopop, paleoTS, paletteer, palettesForR, palmerpenguins, palr, pals, PAMA, PandemicLP, pander, panelcn.mops, PanelMatch, panelr, panelvar, PantaRhei, PANTHER.db, PanVizGenerator, papeR, ParallelLogger, parallelPlot, parameters, paramtest, ParBayesianOptimization, parcats, parcoords, Pareto, parglm, parlitools, parmsurvfit, paropt, parseRPDR, parsnip, partialCI, particles, partition, partR2, parzer, pasilla, PASSED, PAsso, passport, passt, PAST, patchwork, patentsview, path.chain, Path2PPI, pathlibr, PathoStat, paths, pathviewr, pathwayPCA, patternplot, Patterns, PAutilities, pavo, paxtoolsr, PBD, PBIR, pbixr, pbm, pca3d, pcal, PCAmatchR, PCAmixdata, PCAN, pccc, pcFactorStan, pcLasso, PCMBase, PCMBaseCpp, pCODE, pcr, PCRedux, pcsstools, pcSteiner, pct, pcts, PDE, pdfsearch, pdftables, pdi, PDN, pdp, pdqr, pds3, pdSpecEst, pdxTrees, peacesciencer, PeacoQC, peakPantheR, peakPick, peakRAM, peco, pedquant, pedtools, penalizedclr, pencal, pense, pensim, pepr, PepsNMR, PepsNMRData, Perc, perccalc, PERFect, performance, performanceEstimation, pergola, periodicDNA, periscope, permimp, permutes, PerseusR, personalized, perturbatr, perturbR, PesticideLoadIndicator, pestr, PetfindeR, pewdata, PGRdup, pgsc, ph2rand, phangorn, phantasus, PharmacoGx, pharmaRTF, phaseR, phastCons30way.UCSC.hg38, PheCAP, PHEindicatormethods, phenesse, phenocamr, phenoCDM, phenofit, phenopath, PheNorm, PhenotypeSimulator, PheVis, philr, phonenumber, phonics, phosphonormalizer, photobiology, photobiologyFilters, photobiologyInOut, photobiologyLamps, photobiologyPlants, photobiologySensors, 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rdwd, re2, reactable, reactlog, ReactomeGSA, reactR, read.gt3x, readabs, readit, readJDX, readODS, readr, readrba, readroper, readsdr, readtext, readwritesqlite, readxl, readxlsb, rebird, recapr, receptLoss, recexcavAAR, recipes, reclin, reconsi, reconstructKM, recorder, RecordTest, recosystem, recount, recount3, recountmethylation, recoup, recurse, reda, ReDaMoR, REDCapExporter, REDCapR, REddyProc, REddyProcNCDF, RedeR, RedisBaseContainer, Rediscover, redist, redland, redlistr, rEDM, redux, ref.ICAR, refinr, refset, refuge, RegEnrich, regioncode, regions, registr, regmed, regmedint, regsplice, regtools, RegularizedSCA, regutools, rehh, ReinforcementLearning, ReIns, relatable, relgam, relMix, remap, remedy, remindR, remotes, REMP, remss, rENA, rentrez, renv, repello, replicateBE, Repliscope, report, reporter, representr, represtools, reproducible, requireR, rerddapXtracto, rescue, resemble, ResidualMatrix, resourcer, restatapi, RestRserve, reticulate, retrodesign, retroharmonize, retrosheet, revdbayes, ReviewR, revulyticsR, rex, rexposome, rfacebookstat, rfacts, rfaRm, Rfastp, RFCCA, RfEmpImp, rFIA, rfishbase, rflexscan, RFLPtools, rfm, RFmerge, rfml, Rfolding, Rforestry, RforProteomics, rfVarImpOOB, rfviz, RGA, RGCCA, RGCxGC, rgdal, rgee, rgen, RGENERATEPREC, rgeoprofile, rgexf, RGF, rgho, Rgin, rgl, RGMQL, RGMQLlib, rgoogleslides, rGREAT, rgugik, rhandsontable, rhdf5, rhdf5filters, Rhdf5lib, rhierbaps, Rhisat2, rhoR, rhosa, RHPCBenchmark, RHRV, rhub, rhymer, ri2, RIA, ribor, rich, ricu, RIdeogram, riem, Riemann, Riex, Rilostat, rinat, ring, rio, ripserr, riskclustr, riskCommunicator, riskmetric, riskParityPortfolio, riskyr, RITAN, RIVER, riverdist, riverplot, rivr, rjade, RJcluster, RJDemetra, rjdmarkdown, rje, RJMCMCNucleosomes, rjqpd, rjwsacruncher, RKelly, rkeops, rKIN, rKolada, rLakeAnalyzer, rlang, Rlda, rless, rLFT, Rlgt, rliger, rmapshaper, rmapzen, RmarineHeatWaves, Rmbal, rmcorr, rmdcev, rmdpartials, rmelting, rmetalog, rMIDAS, rminizinc, RMixtComp, RMLPCA, Rmmquant, rmonad, rmRNAseq, rmsfuns, RMTL, rMVP, rmytarget, RNAAgeCalc, RNAdecay, rnaEditr, RNAmodR, RNAmodR.AlkAnilineSeq, RNAmodR.Data, RNAmodR.ML, RNAmodR.RiboMethSeq, RNAsense, rnaseqcomp, RNAseqNet, rnassqs, rnbp, rNeighborGWAS, rNeighborQTL, rnetcarto, RNewsflow, RNeXML, RNGforGPD, RNHANES, Rnmr1D, rnn, rnpn, rnrfa, roadoi, roahd, robin, RoBMA, robotstxt, robservable, robsurvey, robustlm, robustSingleCell, robvis, ROCit, ROCpAI, ROCR, Rodam, rODE, rodeo, roistats, rolldown, rollRegres, rolr, rols, rolypoly, roots, rope, ROpenCVLite, ropercenter, ropls, ROSeq, rosetta, rosetteApi, rosm, rotations, rotl, rotor, round, Routliers, roxygen2, roxytest, rpact, rpatrec, RPEXE.RPEXT, rphylopic, rpivotTable, rplos, Rpoet, Rpolyhedra, RPostgres, RPPASPACE, rppo, rpredictit, rPref, rprev, rprime, rprojroot, rpsftm, rptR, Rpvt, rqdatatable, RQEntangle, rqt, rquery, Rraven, rrefine, Rrelperm, rRofex, rromeo, RRphylo, RRPP, rrr, RRRR, rrscale, rrvgo, rSAFE, RSAGA, rsample, Rsampling, RScelestial, rsconnect, rscopus, rscorecard, rScudo, RSDA, rSEA, RSelenium, rsemmed, RSentiment, RSeqAn, rsetse, rsimsum, rsinaica, rslurm, rSPDE, RSpectra, rsppfp, RSQL, RSQLite, RSqlParser, rSQM, RSSL, rstan, rstanarm, rstanemax, rstantools, rstap, rstatix, rstoat, rstudioapi, RSuite, rsurfer, rsvg, rSWeeP, RSwissMaps, rsyncrosim, rt, rtables, RTCC, RTCGAToolbox, rtdists, rtext, rticulate, rties, RTIGER, rtika, rtimicropem, rtmpt, RTN, RTNduals, RTNsurvival, rtodoist, rTorch, Rtrack, RTransferEntropy, rtrek, rtrim, rTRNG, rtweet, rubias, rucrdtw, ruin, ruler, rules, rumidas, runibic, runner, runstats, rust, ruta, rv, RVA, RVenn, RVerbalExpressions, rvest, rvg, rviewgraph, RVS, rwavelet, RWDataPlyr, rwebstat, rwhatsapp, rWikiPathways, RWildbook, rWind, rWishart, RWmisc, RWsearch, Rwtss, rwty, Rxnat, RxODE, Ryacas, Ryacas0, ryandexdirect, rym, RZooRoH, s2net, sabarsi, sabre, SADISA, saeRobust, saeSim, safedata, safejoin, SAIGEgds, sail, salem, salesforcer, SAMBA, samc, SAMGEP, samplesizeCMH, samplingbook, samplingDataCRT, SamplingStrata, samurais, SanFranBeachWater, sanityTracker, sankeywheel, santaR, santoku, sanzo, sapevom, sapfluxnetr, sara4r, sarp.snowprofile, sarp.snowprofile.alignment, sars, sasfunclust, sass, sassy, satellite, SAVER, SBICgraph, sbl, sbm, SBMSplitMerge, sbo, SC2API, SC3, scaffolder, scAlign, scalpel, SCANVIS, SCATE, SCATEData, scater, scatterD3, scatterpie, scBFA, SCBN, scbursts, scCB2, scClassify, scDblFinder, scde, scdhlm, scDIFtest, scFeatureFilter, scGPS, schex, scholar, scHOT, schrute, scifigure, scipub, scLink, sclr, scMAGeCK, scmap, scMappR, scMerge, scModels, SCnorm, scone, Sconify, SCOPE, scoper, scorecard, scoreInvHap, scorepeak, scoringRules, scoringTools, scoringutils, SCORNET, SCORPIUS, SCOUTer, scp, scPCA, scPipe, SCPME, scran, scRecover, scRepertoire, scriptexec, scrm, scRNAseq, scrobbler, scrollrevealR, scrubr, scruff, scry, scSorter, scTHI, SCtools, scuttle, SDALGCP, SDAR, sdcHierarchies, sdcLog, sdcSpatial, sdcTable, 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Reverse enhances: dygraphs

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