onemap: Construction of Genetic Maps in Experimental Crosses

Analysis of molecular marker data from model (backcrosses, F2 and recombinant inbred lines) and non-model systems (i. e. outcrossing species). For the later, it allows statistical analysis by simultaneously estimating linkage and linkage phases (genetic map construction) according to Wu et al. (2002) <doi:10.1006/tpbi.2002.1577>. All analysis are based on multipoint approaches using hidden Markov models.

Version: 2.8.0
Depends: R (≥ 3.6.0)
Imports: ggplot2 (≥ 2.2.1), plotly (≥ 4.7.1), reshape2 (≥ 1.4.1), Rcpp (≥ 0.10.5), graphics, methods, stats, utils, grDevices, smacof, princurve, parallel, dplyr, tidyr, htmlwidgets, ggpubr, RColorBrewer, dendextend, rebus, vcfR (≥ 1.6.0)
LinkingTo: Rcpp (≥ 0.10.5)
Suggests: knitr (≥ 1.10), rmarkdown, testthat, stringr
Published: 2021-12-01
Author: Gabriel Margarido [aut], Marcelo Mollinari [aut], Cristiane Taniguti [ctb, cre], Getulio Ferreira [ctb], Rodrigo Amadeu [ctb], Karl Broman [ctb], Katharine Preedy [ctb, cph] (MDS ordering algorithm), Bastian Schiffthaler [ctb, cph] (HMM parallelization), Augusto Garcia [aut, ctb]
Maintainer: Cristiane Taniguti <chtaniguti at tamu.edu>
BugReports: https://github.com/augusto-garcia/onemap/wiki
License: GPL-3
URL: https://github.com/augusto-garcia/onemap
NeedsCompilation: yes
Citation: onemap citation info
CRAN checks: onemap results

Documentation:

Reference manual: onemap.pdf
Vignettes: Inbred Based Populations
Introduction to R
Outcrossing Populations
Overview

Downloads:

Package source: onemap_2.8.0.tar.gz
Windows binaries: r-devel: not available, r-release: not available, r-oldrel: not available
macOS binaries: r-release (arm64): not available, r-release (x86_64): onemap_2.1.3.tgz, r-oldrel: onemap_2.1.3.tgz
Old sources: onemap archive

Linking:

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