This vignette briefly demonstrates multiple features of
babette, without going into much detail.
First, load the library:
This vignette shows how to:
In all cases, this is done for a short MCMC chain length of 10K:
Also, in all cases, we use the same BEAST2 options:
For an alignment, we’ll use a
babette example alignment.
Effective sample sizes, with 20% burn-in removed:
For a reliable inference, use an ESS of at least 200.