CRAN Package Check Results for Package ubms

Last updated on 2021-07-31 07:51:03 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.2 354.17 262.77 616.94 NOTE
r-devel-linux-x86_64-debian-gcc 1.0.2 284.10 200.03 484.13 NOTE
r-devel-linux-x86_64-fedora-clang 1.0.2 801.31 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0.2 828.97 NOTE
r-devel-windows-x86_64 1.0.2 278.00 345.00 623.00 NOTE
r-devel-windows-x86_64-gcc10-UCRT 1.0.2 WARN
r-patched-linux-x86_64 1.0.2 NOTE
r-patched-solaris-x86 1.0.2 879.70 NOTE
r-release-linux-x86_64 1.0.2 303.22 254.66 557.88 NOTE
r-release-macos-arm64 1.0.2 WARN
r-release-macos-x86_64 1.0.2 NOTE
r-release-windows-ix86+x86_64 1.0.2 714.00 349.00 1063.00 NOTE
r-oldrel-macos-x86_64 1.0.2 NOTE
r-oldrel-windows-ix86+x86_64 1.0.2 619.00 486.00 1105.00 NOTE

Check Details

Version: 1.0.2
Check: for GNU extensions in Makefiles
Result: NOTE
    GNU make is a SystemRequirements.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-devel-windows-x86_64-gcc10-UCRT, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0.2
Check: installed package size
Result: NOTE
     installed size is 52.2Mb
     sub-directories of 1Mb or more:
     R 1.4Mb
     libs 50.1Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-patched-solaris-x86, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0.2
Check: line endings in C/C++/Fortran sources/headers
Result: NOTE
    Found the following sources/headers with CR or CRLF line endings:
     src/RcppExports.cpp
     src/stanExports_colext.cc
     src/stanExports_colext.h
     src/stanExports_single_season.cc
     src/stanExports_single_season.h
    Some Unix compilers require LF line endings.
Flavor: r-devel-windows-x86_64-gcc10-UCRT

Version: 1.0.2
Check: line endings in Makefiles
Result: WARN
    Found the following Makefile(s) with CR or CRLF line endings:
     src/Makevars
    Some Unix 'make' programs require LF line endings.
Flavor: r-devel-windows-x86_64-gcc10-UCRT

Version: 1.0.2
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘JAGS-comparison.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    --- finished re-building ‘JAGS-comparison.Rmd’
    
    --- re-building ‘random-effects.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    --- finished re-building ‘random-effects.Rmd’
    
    --- re-building ‘ubms.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    Loading required package: lattice
    Warning: 22 sites have been discarded because of missing data.
    
    Attaching package: 'ubms'
    
    The following objects are masked from 'package:unmarked':
    
     fitList, projected
    
    Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
    Running the chains for more iterations may help. See
    http://mc-stan.org/misc/warnings.html#bulk-ess
    Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
    Running the chains for more iterations may help. See
    http://mc-stan.org/misc/warnings.html#tail-ess
    Warning in title(main = main, sub = sub, xlab = xlab, ylab = ylab, ...) :
     no font could be found for family "Arial"
    Warning in title(main = main, sub = sub, xlab = xlab, ylab = ylab, ...) :
     no font could be found for family "Arial"
    Warning in title(main = main, sub = sub, xlab = xlab, ylab = ylab, ...) :
     no font could be found for family "Arial"
    Warning in title(main = main, sub = sub, xlab = xlab, ylab = ylab, ...) :
     no font could be found for family "Arial"
    Warning in title(main = main, sub = sub, xlab = xlab, ylab = ylab, ...) :
     no font could be found for family "Arial"
    Warning in title(main = main, sub = sub, xlab = xlab, ylab = ylab, ...) :
     no font could be found for family "Arial"
    Warning in title(main = main, sub = sub, xlab = xlab, ylab = ylab, ...) :
     no font could be found for family "Arial"
    Warning in title(main = main, sub = sub, xlab = xlab, ylab = ylab, ...) :
     no font could be found for family "Arial"
    Warning in title(main = main, sub = sub, xlab = xlab, ylab = ylab, ...) :
     no font could be found for family "Arial"
    Warning in axis(1, ...) : no font could be found for family "Arial"
    Warning in axis(1, ...) : no font could be found for family "Arial"
    Warning in axis(1, ...) : no font could be found for family "Arial"
    Warning in axis(1, ...) : no font could be found for family "Arial"
    Warning in axis(1, ...) : no font could be found for family "Arial"
    Warning in axis(1, ...) : no font could be found for family "Arial"
    Warning in axis(1, ...) : no font could be found for family "Arial"
    Warning in axis(1, ...) : no font could be found for family "Arial"
    Warning in axis(2, ...) : no font could be found for family "Arial"
    Warning in axis(2, ...) : no font could be found for family "Arial"
    Warning in axis(2, ...) : no font could be found for family "Arial"
    Warning in axis(2, ...) : no font could be found for family "Arial"
    Warning in axis(2, ...) : no font could be found for family "Arial"
    Warning in axis(2, ...) : no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning: Some Pareto k diagnostic values are slightly high. See help('pareto-k-diagnostic') for details.
    
    Warning: Some Pareto k diagnostic values are slightly high. See help('pareto-k-diagnostic') for details.
    
    Warning:
    1 (0.4%) p_waic estimates greater than 0.4. We recommend trying loo instead.
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y, :
     no font could be found for family "Arial"
    Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y, :
     no font could be found for family "Arial"
    Quitting from lines 305-306 (ubms.Rmd)
    Error: processing vignette 'ubms.Rmd' failed with diagnostics:
    polygon edge not found
    --- failed re-building ‘ubms.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘ubms.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-macos-arm64