CRAN Package Check Results for Package onemap

Last updated on 2022-01-26 07:52:52 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.8.1 84.12 215.58 299.70 ERROR --no-vignettes
r-devel-linux-x86_64-debian-gcc 2.8.1 53.04 158.61 211.65 ERROR --no-vignettes
r-devel-linux-x86_64-fedora-clang 2.8.1 481.19 ERROR
r-devel-linux-x86_64-fedora-gcc 2.8.1 328.75 ERROR
r-devel-windows-x86_64-new-UL 2.8.1 155.00 298.00 453.00 ERROR
r-devel-windows-x86_64-new-TK 2.8.1 ERROR --no-vignettes
r-patched-linux-x86_64 2.8.1 68.77 198.60 267.37 OK --no-vignettes
r-release-linux-x86_64 2.8.1 77.28 196.93 274.21 OK --no-vignettes
r-release-macos-arm64 2.8.1 NOTE
r-release-macos-x86_64 2.8.1 NOTE
r-release-windows-ix86+x86_64 2.8.1 170.00 438.00 608.00 OK
r-oldrel-macos-x86_64 2.8.1 NOTE
r-oldrel-windows-ix86+x86_64 2.8.1 220.00 438.00 658.00 OK

Check Details

Version: 2.8.1
Flags: --no-vignettes
Check: examples
Result: ERROR
    Running examples in 'onemap-Ex.R' failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: add_marker
    > ### Title: Creates a new sequence by adding markers.
    > ### Aliases: add_marker
    >
    > ### ** Examples
    >
    > data(onemap_example_out)
    > twopt <- rf_2pts(onemap_example_out)
    Error in is(input.obj, c("onemap", "outcross", "f2", "backcross", "riself", :
     length(class2) == 1L is not TRUE
    Calls: rf_2pts -> is -> stopifnot
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 2.8.1
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘stringi’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 2.8.1
Check: examples
Result: ERROR
    Running examples in ‘onemap-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: add_marker
    > ### Title: Creates a new sequence by adding markers.
    > ### Aliases: add_marker
    >
    > ### ** Examples
    >
    > data(onemap_example_out)
    > twopt <- rf_2pts(onemap_example_out)
    Error in is(input.obj, c("onemap", "outcross", "f2", "backcross", "riself", :
     length(class2) == 1L is not TRUE
    Calls: rf_2pts -> is -> stopifnot
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-new-UL

Version: 2.8.1
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘Inbred_Based_Populations.Rmd’ using rmarkdown
    Quitting from lines 563-564 (Inbred_Based_Populations.Rmd)
    Error: processing vignette 'Inbred_Based_Populations.Rmd' failed with diagnostics:
    length(class2) == 1L is not TRUE
    --- failed re-building ‘Inbred_Based_Populations.Rmd’
    
    --- re-building ‘Introduction_R.Rmd’ using rmarkdown
    --- finished re-building ‘Introduction_R.Rmd’
    
    --- re-building ‘Outcrossing_Populations.Rmd’ using rmarkdown
    Quitting from lines 415-416 (Outcrossing_Populations.Rmd)
    Error: processing vignette 'Outcrossing_Populations.Rmd' failed with diagnostics:
    length(class2) == 1L is not TRUE
    --- failed re-building ‘Outcrossing_Populations.Rmd’
    
    --- re-building ‘Overview.Rmd’ using rmarkdown
    --- finished re-building ‘Overview.Rmd’
    
    SUMMARY: processing the following files failed:
     ‘Inbred_Based_Populations.Rmd’ ‘Outcrossing_Populations.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-new-UL

Version: 2.8.1
Flags: --no-vignettes
Check: package dependencies
Result: ERROR
    Packages required but not available: 'smacof', 'ggpubr'
    
    See section 'The DESCRIPTION file' in the 'Writing R Extensions'
    manual.
Flavor: r-devel-windows-x86_64-new-TK

Version: 2.8.1
Check: installed package size
Result: NOTE
     installed size is 5.1Mb
     sub-directories of 1Mb or more:
     doc 1.4Mb
     libs 2.5Mb
Flavor: r-release-macos-arm64