CRAN Package Check Results for Package HSAUR2

Last updated on 2021-09-21 07:50:12 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1-18 3.72 226.06 229.78 OK
r-devel-linux-x86_64-debian-gcc 1.1-18 3.11 181.78 184.89 OK
r-devel-linux-x86_64-fedora-clang 1.1-18 278.54 OK
r-devel-linux-x86_64-fedora-gcc 1.1-18 266.25 OK
r-devel-windows-x86_64 1.1-18 6.00 51.00 57.00 OK --no-vignettes
r-devel-windows-x86_64-gcc10-UCRT 1.1-18 ERROR
r-patched-linux-x86_64 1.1-18 4.88 229.44 234.32 OK
r-patched-solaris-x86 1.1-18 421.00 OK
r-release-linux-x86_64 1.1-18 3.92 227.78 231.70 OK
r-release-macos-arm64 1.1-18 NOTE
r-release-macos-x86_64 1.1-18 OK
r-release-windows-ix86+x86_64 1.1-18 9.00 50.00 59.00 OK --no-vignettes
r-oldrel-macos-x86_64 1.1-18 OK
r-oldrel-windows-ix86+x86_64 1.1-18 8.00 45.00 53.00 OK --no-vignettes

Check Details

Version: 1.1-18
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     WARNING: installation-time patches will not be applied, could not get the patches index
Flavor: r-devel-windows-x86_64-gcc10-UCRT

Version: 1.1-18
Check: PDF version of manual
Result: WARN
    LaTeX errors when creating PDF version.
    This typically indicates Rd problems.
Flavor: r-devel-windows-x86_64-gcc10-UCRT

Version: 1.1-18
Check: PDF version of manual without hyperrefs or index
Result: ERROR
    Re-running with no redirection of stdout/stderr.
Flavor: r-devel-windows-x86_64-gcc10-UCRT

Version: 1.1-18
Check: re-building of vignette outputs
Result: NOTE
    Error(s) in re-building vignettes:
    --- re-building ‘Ch_analysing_longitudinal_dataI.Rnw’ using Sweave
    Loading required package: HSAUR2
    Loading required package: tools
    Loading required package: mvtnorm
    Loading required package: survival
    Loading required package: TH.data
    Loading required package: MASS
    
    Attaching package: 'TH.data'
    
    The following object is masked from 'package:MASS':
    
     geyser
    
    --- finished re-building 'Ch_analysing_longitudinal_dataI.Rnw'
    
    --- re-building ‘Ch_analysing_longitudinal_dataII.Rnw’ using Sweave
    Loading required package: HSAUR2
    Loading required package: tools
    Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
    running glm to get initial regression estimate
    Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
    running glm to get initial regression estimate
    Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
    running glm to get initial regression estimate
    Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
    running glm to get initial regression estimate
    Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
    running glm to get initial regression estimate
    Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
    running glm to get initial regression estimate
    Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
    running glm to get initial regression estimate
    Loading required package: Matrix
    Warning in checkConv(attr(opt, "derivs"), opt$par, ctrl = control$checkConv, :
     Model failed to converge with max|grad| = 0.197378 (tol = 0.002, component 1)
    --- finished re-building 'Ch_analysing_longitudinal_dataII.Rnw'
    
    --- re-building ‘Ch_analysis_of_variance.Rnw’ using Sweave
    Loading required package: HSAUR2
    Loading required package: tools
    Loading required package: RColorBrewer
    --- finished re-building 'Ch_analysis_of_variance.Rnw'
    
    --- re-building ‘Ch_cluster_analysis.Rnw’ using Sweave
    Loading required package: HSAUR2
    Loading required package: tools
    Package 'mclust' version 5.4.7
    Type 'citation("mclust")' for citing this R package in publications.
    
    Attaching package: 'mvtnorm'
    
    The following object is masked from 'package:mclust':
    
     dmvnorm
    
    Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y, :
     no font could be found for family "Arial"
    
    Error: processing vignette 'Ch_cluster_analysis.Rnw' failed with diagnostics:
     chunk 5 (label = CA-pottery-distplot)
    Error in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y, :
     polygon edge not found
    
    --- failed re-building 'Ch_cluster_analysis.Rnw'
    
    --- re-building ‘Ch_conditional_inference.Rnw’ using Sweave
    Loading required package: HSAUR2
    Loading required package: tools
    Loading required package: survival
    Warning in chisq.test(suicides) :
     Chi-squared approximation may be incorrect
    Warning in approximate(B = 19999) :
     'B' is deprecated; use 'nresample' instead
    --- finished re-building 'Ch_conditional_inference.Rnw'
    
    --- re-building ‘Ch_density_estimation.Rnw’ using Sweave
    Loading required package: HSAUR2
    Loading required package: tools
    KernSmooth 2.23 loaded
    Copyright M. P. Wand 1997-2009
    Loading required package: lattice
    
    Attaching package: 'boot'
    
    The following object is masked from 'package:flexmix':
    
     boot
    
    The following object is masked from 'package:lattice':
    
     melanoma
    
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in title(...) : no font could be found for family "Arial"
    Warning in title(...) : no font could be found for family "Arial"
    Warning in title(...) : no font could be found for family "Arial"
    Warning in title(...) : no font could be found for family "Arial"
    Warning in title(...) : font "Symbol" could not be found for family ""
    Warning in title(...) : no font could be found for family "Arial"
    Warning in title(...) : font "Symbol" could not be found for family ""
    Warning in title(...) : no font could be found for family "Arial"
    Warning in title(...) : no font could be found for family "Arial"
    Warning in title(...) : no font could be found for family "Arial"
    Warning in title(...) : font "Symbol" could not be found for family ""
    Warning in title(...) : font "Symbol" could not be found for family ""
    Warning in title(...) : font "Symbol" could not be found for family ""
    Warning in title(...) : font "Symbol" could not be found for family ""
    Warning in title(...) : no font could be found for family "Arial"
    Warning in title(...) : no font could be found for family "Arial"
    Warning in title(...) : no font could be found for family "Arial"
    Warning in title(...) : no font could be found for family "Arial"
    Warning in title(...) : font "Symbol" could not be found for family ""
    Warning in title(...) : font "Symbol" could not be found for family ""
    Warning in title(...) : font "Symbol" could not be found for family ""
    Warning in title(...) : font "Symbol" could not be found for family ""
    Warning in strwidth(legend, units = "user", cex = cex, font = text.font) :
     no font could be found for family "Arial"
    Warning in strwidth(legend, units = "user", cex = cex, font = text.font) :
     no font could be found for family "Arial"
    Warning in strwidth(legend, units = "user", cex = cex, font = text.font) :
     no font could be found for family "Arial"
    Warning in strheight(legend, units = "user", cex = cex) :
     no font could be found for family "Arial"
    Warning in strwidth(title, units = "user", cex = cex) :
     no font could be found for family "Arial"
    Package 'mclust' version 5.4.7
    Type 'citation("mclust")' for citing this R package in publications.
    Warning in sub(object$syntax$docexpr, val, chunk[pos[1L]]) :
     argument 'replacement' has length > 1 and only the first element will be used
    --- finished re-building 'Ch_density_estimation.Rnw'
    
    --- re-building ‘Ch_errata.Rnw’ using Sweave
    Loading required package: HSAUR2
    Loading required package: tools
    --- finished re-building 'Ch_errata.Rnw'
    
    --- re-building ‘Ch_gam.Rnw’ using Sweave
    Loading required package: HSAUR2
    Loading required package: tools
    Loading required package: nlme
    This is mgcv 1.8-36. For overview type 'help("mgcv-package")'.
    Loading required package: parallel
    Loading required package: stabs
    Loading required package: RColorBrewer
    --- finished re-building 'Ch_gam.Rnw'
    
    --- re-building ‘Ch_graphical_display.Rnw’ using Sweave
    Loading required package: HSAUR2
    Loading required package: tools
    --- finished re-building 'Ch_graphical_display.Rnw'
    
    --- re-building ‘Ch_introduction_to_R.Rnw’ using Sweave
    Loading required package: HSAUR2
    Loading required package: tools
    Error in quantile.default(x, prob = c(0.25, 0.75), names = FALSE) :
     missing values and NaN's not allowed if 'na.rm' is FALSE
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in title(...) : no font could be found for family "Arial"
    Warning in title(...) : no font could be found for family "Arial"
    Warning in title(...) : no font could be found for family "Arial"
    Warning in title(...) : no font could be found for family "Arial"
    --- finished re-building 'Ch_introduction_to_R.Rnw'
    
    --- re-building ‘Ch_logistic_regression_glm.Rnw’ using Sweave
    Loading required package: HSAUR2
    Loading required package: tools
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    --- finished re-building 'Ch_logistic_regression_glm.Rnw'
    
    --- re-building ‘Ch_meta_analysis.Rnw’ using Sweave
    Loading required package: HSAUR2
    Loading required package: tools
    --- finished re-building 'Ch_meta_analysis.Rnw'
    
    --- re-building ‘Ch_multidimensional_scaling.Rnw’ using Sweave
    Loading required package: HSAUR2
    Loading required package: tools
    Loading required package: RColorBrewer
    Warning in cmdscale(watervoles, k = 13, eig = TRUE) :
     only 7 of the first 13 eigenvalues are > 0
    --- finished re-building 'Ch_multidimensional_scaling.Rnw'
    
    --- re-building ‘Ch_multiple_linear_regression.Rnw’ using Sweave
    Loading required package: HSAUR2
    Loading required package: tools
    Loading required package: RColorBrewer
    --- finished re-building 'Ch_multiple_linear_regression.Rnw'
    
    --- re-building ‘Ch_principal_components_analysis.Rnw’ using Sweave
    Loading required package: HSAUR2
    Loading required package: tools
    --- finished re-building 'Ch_principal_components_analysis.Rnw'
    
    --- re-building ‘Ch_recursive_partitioning.Rnw’ using Sweave
    Loading required package: HSAUR2
    Loading required package: tools
    Loading required package: grid
    randomForest 4.6-14
    Type rfNews() to see new features/changes/bug fixes.
    Loading required package: mvtnorm
    Loading required package: modeltools
    Loading required package: stats4
    Loading required package: strucchange
    Loading required package: zoo
    
    Attaching package: 'zoo'
    
    The following objects are masked from 'package:base':
    
     as.Date, as.Date.numeric
    
    Loading required package: sandwich
    Loading required package: libcoin
    
    Attaching package: 'partykit'
    
    The following objects are masked from 'package:party':
    
     cforest, ctree, ctree_control, edge_simple, mob,
     mob_control, node_barplot, node_bivplot,
     node_boxplot, node_inner, node_surv, node_terminal,
     varimp
    
    --- finished re-building 'Ch_recursive_partitioning.Rnw'
    
    --- re-building ‘Ch_simple_inference.Rnw’ using Sweave
    Loading required package: HSAUR2
    Loading required package: tools
    Loading required package: grid
    Warning in wilcox.test.default(mooringdiff) :
     cannot compute exact p-value with ties
    Warning in wilcox.test.default(mooringdiff) :
     cannot compute exact p-value with ties
    --- finished re-building 'Ch_simple_inference.Rnw'
    
    --- re-building ‘Ch_simultaneous_inference.Rnw’ using Sweave
    Loading required package: HSAUR2
    Loading required package: tools
    Loading required package: mvtnorm
    Loading required package: survival
    Loading required package: TH.data
    Loading required package: MASS
    
    Attaching package: 'TH.data'
    
    The following object is masked from 'package:MASS':
    
     geyser
    
    Loading required package: Matrix
    --- finished re-building 'Ch_simultaneous_inference.Rnw'
    
    --- re-building ‘Ch_survival_analysis.Rnw’ using Sweave
    Loading required package: HSAUR2
    Loading required package: tools
    Loading required package: grid
    Loading required package: mvtnorm
    Loading required package: modeltools
    Loading required package: stats4
    Loading required package: strucchange
    Loading required package: zoo
    
    Attaching package: 'zoo'
    
    The following objects are masked from 'package:base':
    
     as.Date, as.Date.numeric
    
    Loading required package: sandwich
    Warning in plot.window(...) :
     "legend.text" is not a graphical parameter
    Warning in plot.window(...) : "legend.bty" is not a graphical parameter
    Warning in plot.xy(xy, type, ...) :
     "legend.text" is not a graphical parameter
    Warning in plot.xy(xy, type, ...) :
     "legend.bty" is not a graphical parameter
    Warning in axis(side = side, at = at, labels = labels, ...) :
     "legend.text" is not a graphical parameter
    Warning in axis(side = side, at = at, labels = labels, ...) :
     "legend.bty" is not a graphical parameter
    Warning in axis(side = side, at = at, labels = labels, ...) :
     "legend.text" is not a graphical parameter
    Warning in axis(side = side, at = at, labels = labels, ...) :
     "legend.bty" is not a graphical parameter
    Warning in box(...) : "legend.text" is not a graphical parameter
    Warning in box(...) : "legend.bty" is not a graphical parameter
    Warning in title(...) : "legend.text" is not a graphical parameter
    Warning in title(...) : "legend.bty" is not a graphical parameter
    Warning in approximate(B = 10000) :
     'B' is deprecated; use 'nresample' instead
    --- finished re-building 'Ch_survival_analysis.Rnw'
    
    SUMMARY: processing the following file failed:
     ‘Ch_cluster_analysis.Rnw’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-macos-arm64