CRAN Package Check Results for Package DeLorean

Last updated on 2021-08-04 07:49:30 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.5.0 513.25 357.65 870.90 NOTE
r-devel-linux-x86_64-debian-gcc 1.5.0 429.07 283.82 712.89 NOTE
r-devel-linux-x86_64-fedora-clang 1.5.0 1124.54 NOTE
r-devel-linux-x86_64-fedora-gcc 1.5.0 1220.94 NOTE
r-devel-windows-x86_64 1.5.0 501.00 401.00 902.00 NOTE
r-devel-windows-x86_64-gcc10-UCRT 1.5.0 NOTE
r-patched-linux-x86_64 1.5.0 487.61 374.03 861.64 NOTE
r-patched-solaris-x86 1.5.0 1192.30 NOTE
r-release-linux-x86_64 1.5.0 472.40 355.55 827.95 NOTE
r-release-macos-arm64 1.5.0 WARN
r-release-macos-x86_64 1.5.0 NOTE
r-release-windows-ix86+x86_64 1.5.0 1081.00 476.00 1557.00 NOTE
r-oldrel-macos-x86_64 1.5.0 NOTE
r-oldrel-windows-ix86+x86_64 1.5.0 898.00 510.00 1408.00 NOTE

Check Details

Version: 1.5.0
Check: for GNU extensions in Makefiles
Result: NOTE
    GNU make is a SystemRequirements.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-devel-windows-x86_64-gcc10-UCRT, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.5.0
Check: installed package size
Result: NOTE
     installed size is 83.0Mb
     sub-directories of 1Mb or more:
     libs 80.2Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-patched-solaris-x86, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.5.0
Check: top-level files
Result: NOTE
    ‘configure’: /bin/bash is not portable
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.5.0
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘lattice’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-gcc10-UCRT, r-patched-solaris-x86, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 1.5.0
Check: line endings in C/C++/Fortran sources/headers
Result: NOTE
    Found the following sources/headers with CR or CRLF line endings:
     src/stan_files/exact.hpp
     src/stan_files/exactsizes.hpp
     src/stan_files/lowrank.hpp
     src/stan_files/lowranksizes.hpp
    Some Unix compilers require LF line endings.
Flavor: r-devel-windows-x86_64-gcc10-UCRT

Version: 1.5.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘DeLorean.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    Loading required package: Rcpp
    - For execution on a local, multicore CPU with excess RAM we recommend calling
    options(mc.cores = parallel::detectCores())
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Joining, by = "gene"
    Joining, by = "cell"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "cell"
    Joining, by = c("cell", "capture")
    Have 35 cells after filtering
    Joining, by = "cell"
    Have 20 genes after filtering
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "cell"
    Joining, by = c("cell", "capture")
    TSP:scaled:none:1; time=0.016s; LL=-3346.65641890596
    R2E:scaled:none:1; time=0.0279999999999996s; LL=-3330.21788142229
    HC:scaled:none:1; time=0.00099999999999989s; LL=-3392.6089881996
    GW:scaled:none:1; time=0.0140000000000002s; LL=-3324.64572965498
    OLO:scaled:none:1; time=0.00600000000000023s; LL=-3320.06316222643
    TSP:unscaled:none:1; time=0.00600000000000023s; LL=-3327.85966471506
    R2E:unscaled:none:1; time=0.00300000000000011s; LL=-3327.78718031504
    HC:unscaled:none:1; time=0.00099999999999989s; LL=-3381.41869205977
    GW:unscaled:none:1; time=0.0089999999999999s; LL=-3339.3564798767
    OLO:unscaled:none:1; time=0s; LL=-3331.99504739202
    TSP:scaled:pca:1; time=0.00200000000000022s; LL=-3450.73813673826
    R2E:scaled:pca:1; time=0.00500000000000034s; LL=-3450.73813673826
    HC:scaled:pca:1; time=0.00099999999999989s; LL=-3527.31791203912
    GW:scaled:pca:1; time=0.00099999999999989s; LL=-3450.73813673826
    OLO:scaled:pca:1; time=0.00199999999999978s; LL=-3450.73813673826
    TSP:unscaled:pca:1; time=0.00199999999999978s; LL=-3509.00960972798
    R2E:unscaled:pca:1; time=0.004s; LL=-3582.93339263149
    HC:unscaled:pca:1; time=0.0109999999999997s; LL=-3558.77116907192
    GW:unscaled:pca:1; time=0.00199999999999978s; LL=-3442.38968879346
    OLO:unscaled:pca:1; time=0.0120000000000005s; LL=-3442.38968879346
    TSP:scaled:ica:1; time=0.00600000000000023s; LL=-3449.56091390306
    R2E:scaled:ica:1; time=0.00399999999999956s; LL=-3450.73813673826
    HC:scaled:ica:1; time=0s; LL=-3527.31791203912
    GW:scaled:ica:1; time=0.000999999999999446s; LL=-3450.73813673826
    OLO:scaled:ica:1; time=0.00200000000000067s; LL=-3450.73813673826
    TSP:unscaled:ica:1; time=0.00199999999999978s; LL=-3453.9177093806
    R2E:unscaled:ica:1; time=0.00399999999999956s; LL=-3582.93339263149
    HC:unscaled:ica:1; time=0.00100000000000033s; LL=-3558.77116907192
    GW:unscaled:ica:1; time=0s; LL=-3442.38968879346
    OLO:unscaled:ica:1; time=0.000999999999999446s; LL=-3442.38968879346
    TSP:scaled:mds:1; time=0.00200000000000067s; LL=-3465.96123192147
    R2E:scaled:mds:1; time=0.00199999999999978s; LL=-3450.73813673826
    HC:scaled:mds:1; time=0s; LL=-3527.31791203912
    GW:scaled:mds:1; time=0.000999999999999446s; LL=-3450.73813673826
    OLO:scaled:mds:1; time=0.00199999999999978s; LL=-3450.73813673826
    TSP:unscaled:mds:1; time=0.00100000000000033s; LL=-3485.92657634856
    R2E:unscaled:mds:1; time=0.00199999999999978s; LL=-3582.93339263149
    HC:unscaled:mds:1; time=0.00200000000000067s; LL=-3558.77116907192
    GW:unscaled:mds:1; time=0.00100000000000033s; LL=-3442.38968879346
    OLO:unscaled:mds:1; time=0.00199999999999978s; LL=-3442.38968879346
    TSP:scaled:pca:2; time=0.00600000000000023s; LL=-3346.4702685442
    R2E:scaled:pca:2; time=0.00200000000000067s; LL=-3370.04021824386
    HC:scaled:pca:2; time=0.000999999999999446s; LL=-3366.17736291515
    GW:scaled:pca:2; time=0.00100000000000033s; LL=-3387.64935708318
    OLO:scaled:pca:2; time=0.00900000000000034s; LL=-3354.11076564264
    TSP:unscaled:pca:2; time=0.00199999999999978s; LL=-3339.15739124038
    R2E:unscaled:pca:2; time=0.00199999999999978s; LL=-3364.58365661932
    HC:unscaled:pca:2; time=0.00100000000000033s; LL=-3416.31701240886
    GW:unscaled:pca:2; time=0.00100000000000033s; LL=-3382.86779289677
    OLO:unscaled:pca:2; time=0.00199999999999978s; LL=-3350.05355473002
    TSP:scaled:kfa:2; time=0.347s; LL=-3434.53214767521
    R2E:scaled:kfa:2; time=0.359999999999999s; LL=-3420.33797839369
    HC:scaled:kfa:2; time=0.00199999999999978s; LL=-3516.70870564465
    GW:scaled:kfa:2; time=0.00100000000000033s; LL=-3480.7428385555
    OLO:scaled:kfa:2; time=0.00100000000000033s; LL=-3454.7317178997
    TSP:unscaled:kfa:2; time=0.00400000000000045s; LL=-3468.25304619638
    R2E:unscaled:kfa:2; time=0.0190000000000001s; LL=-3563.3344746336
    HC:unscaled:kfa:2; time=0.000999999999999446s; LL=-3640.93541111366
    GW:unscaled:kfa:2; time=0.00199999999999978s; LL=-3435.31235464394
    OLO:unscaled:kfa:2; time=0.00199999999999978s; LL=-3492.93119103479
    TSP:scaled:ica:2; time=0.00800000000000001s; LL=-3365.10126976231
    R2E:scaled:ica:2; time=0.00199999999999978s; LL=-3444.41150098348
    HC:scaled:ica:2; time=0.000999999999999446s; LL=-3400.15386097813
    GW:scaled:ica:2; time=0.0100000000000007s; LL=-3364.46336673253
    OLO:scaled:ica:2; time=0.00100000000000033s; LL=-3354.11076564264
    TSP:unscaled:ica:2; time=0.00899999999999945s; LL=-3354.93845665926
    R2E:unscaled:ica:2; time=0.00200000000000067s; LL=-3409.12213469829
    HC:unscaled:ica:2; time=0.0129999999999999s; LL=-3419.43957484586
    GW:unscaled:ica:2; time=0.00199999999999978s; LL=-3343.73994622165
    OLO:unscaled:ica:2; time=0.00199999999999978s; LL=-3337.14918482371
    TSP:scaled:mds:2; time=0.00699999999999967s; LL=-3362.18601584595
    R2E:scaled:mds:2; time=0.00499999999999989s; LL=-3370.04021824386
    HC:scaled:mds:2; time=0.00200000000000067s; LL=-3366.17736291515
    GW:scaled:mds:2; time=0.00100000000000033s; LL=-3387.64935708318
    OLO:scaled:mds:2; time=0.00200000000000067s; LL=-3354.11076564264
    TSP:unscaled:mds:2; time=0.00400000000000134s; LL=-3337.32292843931
    R2E:unscaled:mds:2; time=0.00199999999999889s; LL=-3364.58365661932
    HC:unscaled:mds:2; time=0.000999999999999446s; LL=-3416.31701240886
    GW:unscaled:mds:2; time=0.000999999999999446s; LL=-3382.86779289677
    OLO:unscaled:mds:2; time=0.000999999999999446s; LL=-3350.05355473002
    TSP:scaled:pca:4; time=0.00200000000000067s; LL=-3365.76778258401
    R2E:scaled:pca:4; time=0.00699999999999967s; LL=-3320.3851449918
    HC:scaled:pca:4; time=0.00199999999999889s; LL=-3371.73882473576
    GW:scaled:pca:4; time=0.00999999999999979s; LL=-3361.89428460191
    OLO:scaled:pca:4; time=0s; LL=-3333.79088483535
    TSP:unscaled:pca:4; time=0.00799999999999912s; LL=-3314.20436150583
    R2E:unscaled:pca:4; time=0.00200000000000067s; LL=-3330.24913034394
    HC:unscaled:pca:4; time=0.004999999999999s; LL=-3375.75660919125
    GW:unscaled:pca:4; time=0.00300000000000011s; LL=-3323.19942901023
    OLO:unscaled:pca:4; time=0.000999999999999446s; LL=-3312.44739421377
    TSP:scaled:kfa:4; time=0.00300000000000011s; LL=-3392.95206595638
    R2E:scaled:kfa:4; time=0.016s; LL=-3405.84545841802
    HC:scaled:kfa:4; time=0.00200000000000067s; LL=-3515.261366403
    GW:scaled:kfa:4; time=0.000999999999999446s; LL=-3378.98607609516
    OLO:scaled:kfa:4; time=0.000999999999999446s; LL=-3463.34603901497
    TSP:unscaled:kfa:4; time=0.00300000000000011s; LL=-3408.87616151067
    R2E:unscaled:kfa:4; time=0.00799999999999912s; LL=-3422.88283647805
    HC:unscaled:kfa:4; time=0s; LL=-3571.67469935114
    GW:unscaled:kfa:4; time=0.000999999999999446s; LL=-3448.79924232869
    OLO:unscaled:kfa:4; time=0.00200000000000067s; LL=-3410.39759710303
    TSP:scaled:ica:4; time=0.011000000000001s; LL=-3412.74383566213
    R2E:scaled:ica:4; time=0.0139999999999993s; LL=-3406.02820576319
    HC:scaled:ica:4; time=0.00300000000000011s; LL=-3499.43283375708
    GW:scaled:ica:4; time=0.00199999999999889s; LL=-3501.22598699003
    OLO:scaled:ica:4; time=0.000999999999999446s; LL=-3424.79491713928
    TSP:unscaled:ica:4; time=0.0180000000000007s; LL=-3348.03138174554
    R2E:unscaled:ica:4; time=0.0140000000000011s; LL=-3391.67098427125
    HC:unscaled:ica:4; time=0.00199999999999889s; LL=-3499.6396678311
    GW:unscaled:ica:4; time=0.00300000000000011s; LL=-3409.44671420351
    OLO:unscaled:ica:4; time=0.00500000000000078s; LL=-3384.98533569823
    TSP:scaled:mds:4; time=0.00200000000000067s; LL=-3319.35818585941
    R2E:scaled:mds:4; time=0.00199999999999889s; LL=-3320.3851449918
    HC:scaled:mds:4; time=0.000999999999999446s; LL=-3371.73882473576
    OLO:scaled:mds:4; time=0s; LL=-3333.79088483535
    GW:scaled:mds:4; time=0.00799999999999912s; LL=-3361.89428460191
    R2E:unscaled:mds:4; time=0.00699999999999967s; LL=-3330.24913034394
    TSP:unscaled:mds:4; time=0.00300000000000011s; LL=-3313.56930482258
    GW:unscaled:mds:4; time=0.000999999999999446s; LL=-3323.19942901023
    HC:unscaled:mds:4; time=0.00699999999999967s; LL=-3375.75660919125
    OLO:unscaled:mds:4; time=0.00200000000000067s; LL=-3312.44739421377
    TSP:scaled:pca:8; time=0.00900000000000034s; LL=-3317.78616188245
    HC:scaled:pca:8; time=0.000999999999999446s; LL=-3397.13141046474
    R2E:scaled:pca:8; time=0.00400000000000134s; LL=-3323.12422924398
    OLO:scaled:pca:8; time=0.00200000000000067s; LL=-3329.43796372335
    GW:scaled:pca:8; time=0.00299999999999834s; LL=-3336.83583735913
    R2E:unscaled:pca:8; time=0.00900000000000034s; LL=-3329.33459967522
    TSP:unscaled:pca:8; time=0.00200000000000067s; LL=-3321.70980294954
    GW:unscaled:pca:8; time=0.000999999999999446s; LL=-3321.28158752383
    HC:unscaled:pca:8; time=0.00199999999999889s; LL=-3370.68365423081
    TSP:scaled:kfa:8; time=0.00400000000000134s; LL=-3356.89277642785
    OLO:unscaled:pca:8; time=0.00100000000000122s; LL=-3327.2987731734
    HC:scaled:kfa:8; time=0s; LL=-3461.73620536923
    R2E:scaled:kfa:8; time=0.00399999999999956s; LL=-3464.28941924986
    GW:scaled:kfa:8; time=0.000999999999999446s; LL=-3364.5253054396
    OLO:scaled:kfa:8; time=0.000999999999999446s; LL=-3338.27324492102
    R2E:unscaled:kfa:8; time=0.0080000000000009s; LL=-3400.45172450666
    TSP:unscaled:kfa:8; time=0.0229999999999997s; LL=-3330.69074578245
    GW:unscaled:kfa:8; time=0.00600000000000023s; LL=-3421.81809168985
    HC:unscaled:kfa:8; time=0.00100000000000122s; LL=-3341.00579643076
    OLO:unscaled:kfa:8; time=0.000999999999999446s; LL=-3318.99084016958
    TSP:scaled:ica:8; time=0.0310000000000006s; LL=-3503.9502597646
    R2E:scaled:ica:8; time=0.0489999999999995s; LL=-3420.60866523484
    HC:scaled:ica:8; time=0.00200000000000067s; LL=-3599.00259621961
    GW:scaled:ica:8; time=0.00199999999999889s; LL=-3603.3618951754
    OLO:scaled:ica:8; time=0.000999999999999446s; LL=-3473.86912356331
    TSP:unscaled:ica:8; time=0.0550000000000015s; LL=-3461.01190587461
    R2E:unscaled:ica:8; time=0.0609999999999999s; LL=-3554.32249681576
    HC:unscaled:ica:8; time=0.000999999999999446s; LL=-3570.19087707588
    GW:unscaled:ica:8; time=0.00200000000000067s; LL=-3537.34953016832
    OLO:unscaled:ica:8; time=0.000999999999999446s; LL=-3535.24233060674
    TSP:scaled:mds:8; time=0.00200000000000067s; LL=-3336.23368218924
    R2E:scaled:mds:8; time=0.00200000000000067s; LL=-3323.12422924398
    GW:scaled:mds:8; time=0.000999999999999446s; LL=-3336.83583735913
    HC:scaled:mds:8; time=0.00200000000000067s; LL=-3397.13141046474
    TSP:unscaled:mds:8; time=0.00200000000000067s; LL=-3327.37252058675
    OLO:scaled:mds:8; time=0.00100000000000122s; LL=-3329.43796372335
    HC:unscaled:mds:8; time=0.000999999999999446s; LL=-3370.68365423081
    R2E:unscaled:mds:8; time=0.00300000000000011s; LL=-3329.33459967522
    OLO:unscaled:mds:8; time=0.000999999999999446s; LL=-3327.2987731734
    GW:unscaled:mds:8; time=0.00199999999999889s; LL=-3321.28158752383
    Using ordering OLO:unscaled:pca:4; LL=-3312.44739421377
    Using ordering TSP:unscaled:mds:4; LL=-3313.56930482258
    Joining, by = "c"
    Joining, by = c("iter", "g")
    Joining, by = "g"
    Joining, by = "g"
    Quitting from lines 157-159 (DeLorean.Rmd)
    Error: processing vignette 'DeLorean.Rmd' failed with diagnostics:
    polygon edge not found
    --- failed re-building ‘DeLorean.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘DeLorean.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-macos-arm64